Publications 2000-current

 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005

2004 | 2003 | 2002 | 2001 | 2000


See additional publications by Michelle Mack and Ted Schuur.


Balvanera P, Siddique I, Dee L, Pacquette A, Byrnes J, O’Connor MI, Isbell F, Griffin JN, Hungate BA, Gonzalez A, 2014. Linking biodiversity and ecosystem services: current uncertainties and the necessary next steps. Bioscience 64:49-57 

Hungate BA, Duval BD, Dijkstra P, Johnson DW, Ketterer ME, Stiling P, Cheng W, Millman J, Hartley A, Stover DB, 2014. Nitrogen inputs and losses in response to chronic CO2 exposure in a sub-tropical oak woodland. Biogeosciences Discussion

Hurteau, M. D., Robards, T. A., Stevens, D., Saah, D., North, M., & Koch, G. W. (2014). Modeling climate and fuel reduction impacts on mixed-conifer forest carbon stocks in the Sierra Nevada, California. Forest Ecology and Management, 315, 30-42.

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Adair K, Blazewicz SJ, Hungate BA, Hart SC, Dijkstra P, Schwartz E, 2013. A positive relationship between the abundance of ammonia oxidizing archaea and natural abundance δ15N of ecosystems. Soil Biology and Biochemistry 65:313-315 

Briggs BR, Brodie EL, Tom LM, Dong H, Jiang H, Huang Q, Wang S, Hou W, Wu G, Huang L, Hedlund BP, Zhang C, Dijkstra P, Hungate BA, 2013. Spatial and seasonal patterns in microbial communities inhabiting the hot springs of Tengchong, Yunnan Providence, China. Environmental Microbiology doi:10.1111/1462-2920.12311 

Day FP, Schroeder RE, Stover DB, Brown ALP, Butnor JR, Dilustro J, Hungate BA, Dijkstra P, Duval BD, Seiler TJ, Drake BG, Hinkle CR, 2013. The effects of 11 years of CO2 enrichment on roots in a Florida scrub-oak ecosystem. New Phytologist, 200:778-787 DOI: 10.1111/nph.12246

Duval B, Dijkstra P, Drake BG, Johnson DW, Ketterer ME, Megonigal JP, Hungate BA, 2013. Element pool changes within a scrub-oak ecosystem after 11 years of exposure to elevated CO2. PLOS ONE 8: e64386 DOI: 10.1371/journal.pone.0064386

Hedlund BL, Paraiso JJ, Williams AJ, Huang Q, Wei W, Dijkstra P, Hungate BA, Dong H, Zhang CL, 2013. Wide distribution of autochthonous branched glycerol dialkyl glycerol 2 tetraethers (bGDGTs) in U.S. Great Basin hot springs. Frontiers in Terrestrial Microbiology. 4:222, DOI: 10.3389/fmicb.2013.00222 

Hou W, Wang S, Dong H, Jiang H, Briggs BR, Peacock JP, Huang Q, Huang L, Wu g, Zhi X, Li W, Dodsworth JA, Hedlund BP, Zhang C, Hartnett HE, Dijkstra P, Hungate BA, 2013. A comprehensive census of microbial diversity in hot springs of Tengchong, Yunnan province, China, using 16S rRHA gene pyrosequencing. PLoS one 8:353350, DOI 10.1371/journal.pone.0053550 

Hungate BA, Day FP, Dijkstra P, Duval BD, Hinkle CR, Langley JA, Megonigal JP, Stiling P, Johnson DW, Drake BG, 2013. Fire, hurricane and carbon dioxide: effects on net primary production of a subtropical woodland. New Phytologist 200: 767-777. DOI: 10.1111/nph.12409 

Hungate BA, Dijkstra P, Wu Z, Duval BD, Day FP, Johnson DW, Megonigal JP, Brown ALP, Garland JL, 2013. Cumulative response of ecosystem carbon and nitrogen stocks to chronic CO2 exposure in a subtropical oak woodland. New Phytologist 200:753-766. DOI: 10.1111/nph.12333 

Hurteau, MD, Hungate, BA, Koch, GW, North, MP, Smith, GR, 2013. Aligning ecology and markets in the forest carbon cycle. Frontiers in Ecology and the Environment 11:37-42.

Kerhoulas, L. P., Kolb, T. E., Hurteau, M. D., & Koch, G. W. (2013). Managing climate change adaptation in forests: a case study from the US Southwest. Journal of Applied Ecology, 50(6), 1311-1320.

Liu CM, Hungate BA, Tobian AAR, Serwadda DM, Ravel J, Lester R, Kigozi G, Aziz M, Galiwango RM, Nalugoda F, Contente-Cuomo TL, Wawer MJ, Keim PS, Gray RH, 2013. Male circumcision significantly reduces prevalence and load of anaerobic bacteria. mBIO  

Paraiso, J.J., Williams, A.J., Huang, Q., Wei Y., Dijkstra, P., Hungate, B.A., Dong, H., Hedlund, B.P., and Zhang, C.L., 2013. Environmental controls on the distribution and abundance of archaeal lipids in U.S. Great Basin hot springs. Frontiers in Terrestrial Microbiology. 4:247, DOI: 10.3389/fmicb.2013.00247 

Stiling P, Moon D, Rossi A, Forkner R, Hungate BA, Day FP, Schroeder RE, Drake B, 2013. Direct and legacy effects of long-term elevated CO2 on fine root growth and plant-insect interactions. New Phytologist, 200:788-795 DOI: 10.1111/nph.12295  

van Groenigen KJ, Forristal D, Jones M, Smyth N, Schwartz E, Hungate BA, Dijkstra P, in press. Using metabolic tracer techniques to assess the impact of tillage and straw management on microbial carbon use efficiency in soil. Soil Biology & Biochemistry. 66:139-145 DOI: 10.1016/j.soilbio.2013.07.002 

Wymore, A. S., Compson, Z. G., Liu, C. M., Price, L. B., Whitham, T. G., Keim, P., & Marks, J. C. (2013). Contrasting rRNA gene abundance patterns for aquatic fungi and bacteria in response to leaf-litter chemistry. Freshwater Science, 32(2), 663-672.

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Brown JR, Blankinship JC, Niboyet A, van Groenigen KJ, Dijkstra P, Le Roux X, Leadley PW, Hungate BA, 2012. Effects of Multiple Global Change Treatments on Soil N2O Fluxes. Biogeochemistry 109: 85-100. DOI 10.1007/s10533-011-9655-2

Dore S, Montes-Helu M, Hart SC, Hungate BA, Koch GW, Moon JB, Finkral AJ, Kolb TE, 2012. Recovery of ponderosa pine ecosystem carbon and water fluxes from thinning and stand replacing fire. Global Change Biology 18:3171-3185

Dunbar J, Eichorst SA, Gallegos-Graves LV, Silva S, Xie G, Evans RD, Hungate BA, Jackson RB, Megonigal JP, Schadt CW, Vilgalys R, Zak DR, Kuske CR, 2012. Common bacterial responses in six ecosystems exposed to ten years of elevated atmospheric carbon dioxide. Environmental Microbiology 14:1145-1158 doi:10.1111/j.1462-2920.2011.02695.x

Duval BD, Blankinship JC, Dijkstra P, Hungate BA, 2012. CO2 effects on plant nutrient concentration depend on functional group and available nitrogen: a meta-analysis Plant Ecology 213:505-521. DOI:10.1007/s11258-011-9998-8

Hooper DU, Adair EC, Cardinale BJ, Byrnes JEK, Hungate BA, Matulich KL, Gonzalez A, Duffy JE, Gamfeldt L, O’Connor MI, 2012. A global synthesis reveals biodiversity loss as a major driver of ecosystem change. Nature 486 (7401), 105-108

Hungate BA, Hampton HM, 2012. Valuing ecosystems for climate. Nature Climate Change 2, 151–152 doi:10.1038/nclimate1398 

Koch GW, Hungate BA, 2012. Biogeochemical and ecological feedbacks in grassland responses to warming. Nature Climate Change doi:10.1038/nclimate1486 

Maestre, F. T., J. L. Quero, N. J. Gotelli, A. Escudero, V. Ochoa, M. Delgado-Baquerizo, M. García-Gómez, M.A. Bowker, S. Soliveres, C. Escolar, P. García-Palacios, M. Berdugo, E. Valencia, B. Gozalo, A. Gallardo, L. Aguilera, T. Arredondo, J. Blones, B. Boeken, D. Bran, A.A. Conceição, O. Cabrera, M. Chaieb, M. Derak, D.J. Eldridge, C.I. Espinosa, A. Florentino, J. Gaitán, M.G. Gatica, W. Ghiloufi, S. Gómez-González, J.R. Gutiérrez, R.M. Hernández, X. Huang, E. Huber-Sannwald, M. Jankju, M. Miriti, J. Monerris, R.L. Mau, E. Morici, K. Naseri, A. Ospina, V. Polo, A. Prina, E. Pucheta, D.A. Ramírez-Collantes, R. Romão, M. Tighe, C. Torres-Díaz, J.Val, J.P. Veiga, D. Wang, E. Zaady (2012) Plant Species Richness and Ecosystem Multifunctionality in Global Drylands. Science. 335: 214-218.

Templer PH, Mack MC, Chapin III FS, Christenson LM, Compton J, Crook H, Currie W, Curtis C, Dail B, D’Antonio CM, Emmett BA, Epstein H, Goodale C, Gundersen P, Hobbie SE, Holland K, Hooper DU, Hungate BA, Lamontagne S, Nadelhoffer KJ, Osenberg CW, Perakis SS, Schleppi P, Schimel J, Schmidt IK, Sommerkorn M, Spoelstra J, Tietema A, Wessel WW, ZakDR, 2012. Sinks for Nitrogen Inputs in Terrestrial Ecosystems: A Meta-Analysis of Enriched 15N Field Tracer Studies. Ecology. 93 (8), 1816-1829

van Groenigen KJ, van Kessel C, Hungate BA, 2012. Increased greenhouse gas intensity of rice production under future atmospheric conditions. Nature Climate Change. doi:10.1038/nclimate1712

Zhuoting Wu, Paul Dijkstra, George W Koch and Bruce A Hungate (2012) Grassland ecosystems in a warmer climate - biogeochemical and ecological feedbacks. Nature Climate Change. DOI: 10.1038/NCLIMATE1486.

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Anderson RG, Canadell JG, Randerson JT, Jackson RB, Hungate BA, Baldocchi DD, Ban-Weiss GA, Bonan GB, Caldeira K, Cao L, Diffenbaugh NS, Gurney KR, Kueppers LM, Law BE, Luyssaert S, O’Halloran TL, 2011. Biophysical considerations in forestry for climate protection. Frontiers in Ecology and the Environment 9:174-182

Dijkstra P, Thomas S, Heinrich PL, Koch GW, Schwartz E, Hungate BA, 2011. Effect of temperature on metabolic activity of intact microbial communities: evidence for altered metabolic pathway activity but not for increased maintenance respiration and reduced carbon use efficiency. Soil Biology & Biochemistry 43:2023-2031

Dodsworth JA, Hungate BA, de la Torre J, Jiang H, Hedlund BP, 2011. Measuring nitrification, denitrification, and related biomarkers in terrestrial geothermal environments. In, Methods in Enzymology, Ed. Martin Klotz.

Dodsworth JA, Hungate BA, Hedlund BP, 2011. Ammonia oxidation, denitrification, and dissimilatory nitrate reduction to ammonium (DNRA) in two US Great Basin hot springs with abundant ammonia-oxidizing archaea. Environmental Microbiology 13:2371-2386 

Duval BD, Dijkstra P, Natali SA, Megonigal JP, Ketterer ME, Drake BG, Lerdau MT, Gordon G, Anbar AD, Hungate BA, 2011. Plant-soil distribution of potentially toxic elements in response to elevated CO2Environmental Science & Technology, 45:2570-2574. DOI: 10.1021/es102250u

Niboyet A, Le Roux X, Barthes L, Hungate BA, Dijkstra P, Blankinship JC, Brown JR, Field CB, Leadley PW, 2011. Testing interactive effects of global environmental changes on soil nitrogen cycling. Ecosphere 2:art56. Doi:10.1890/ES10-00148.1

Sullivan BW, Kolb TE, Hart SC, Kaye JP, Hungate BA, Dore S, Montes-Helu M, 2011. Wildfire reduces carbon dioxide efflux and increases methane uptake in ponderosa pine forest soils of the southwestern USA. Biogeochemistry, 104:  251-265 DOI 10.1007/s10533-010-9499-1

van Groenigen KJ, Osenberg CW, Hungate BA, 2011. Increased soil emissions of potent greenhouse gases under elevated CO2Nature, 475: 214-U121   DOI: 10.1038/nature10176

van Gestel, N., D. Schwilk, D.T. Tissue, J.C. Zak. 2011. Reductions in daily soil temperature variability increases soil microbial biomass C and decreases soil N availability in the Chihuahuan Desert: implications for ecosystem C and N fluxes. Global Change Biology 17:3564-3576.

Weber CF, Zak DR, Hungate BA, Jackson RB, Vilgalys R, Evans RD, Schadt CW, Megonigal JP, and Kuske CR, 2011. Responses of soil cellulolytic fungal communities to elevated atmospheric CO2 are complex and variable across five ecosystems. Environmental Microbiology 13:2778-2793

Wu Z, Koch GW, Dijkstra P, Bowker MA, Hungate BA, 2011. Responses of ecosystem carbon cycling to climate change treatments along an elevation gradient. Ecosystems 14:1066-1080, DOI: 10.1007/s10021-011-9464-4

Wu Z, Dijkstra P, Koch GW, Peñuelas J, Hungate BA, 2011. Responses of terrestrial ecosystems to temperature and precipitation change: a meta-analysis of experimental manipulation. Global Change Biology 17:927-942. DOI: 10.1111/j.1365-2486.2010.02302.x

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Ambrose, A. R., Sillett, S. C., Koch, G. W., Van Pelt, R., Antoine, M. E., & Dawson, T. E. (2010). Effects of height on treetop transpiration and stomatal conductance in coast redwood (Sequoia sempervirens). Tree physiology, 30(10), 1260-1272.

Blankinship J, Brown JR, Dijkstra P, Allwright MA, Hungate BA, 2010. Response of terrestrial methane uptake to interactive changes in precipitation and temperature along a climatic gradient. Ecosystems DOI: 10.1007/s10021-010-9391-9

Blankinship JC, Brown JR, Dijkstra P, Hungate BA, 2010. Effects of interactive global change on methane uptake in an annual grassland. Journal of Geophysical Research, 115, G02008, doi:10.1029/2009JG001097.

Dore S, Kolb TE, Montes-Helu M, Eckert SE, Sullivan BW, Hungate BA, Kaye JP, Hart SC, Koch GW, Finkral A, 2010. Carbon and water fluxes from ponderosa pine forests disturbed by wildfire and thinning. Ecological Applications 20:663-683

Liu X.J., Zhou J.B., Chen Z.J.,Wu X.H., Wang Y., Ding X.L.(2010). Nitrate leaching from sunlight greenhouse soils with different cultivation years during summer fallow periods. Transactions of the Chinese Society of Agricultural Engineering. 26:272-278. 

Oldham, A. R., Sillett, S. C., Tomescu, A. M., & Koch, G. W. (2010). The hydrostatic gradient, not light availability, drives height-related variation in Sequoia sempervirens (Cupressaceae) leaf anatomy. American Journal of Botany, 97(7), 1087-1097.

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Chen Z.J., Wang Y.Q., Zhou J.B., Liu X.J., Zhou B. (2009). Quantity and intensity of potassium and its exchange relationship with calcium in sunlight greenhouse soils. Plant Nutrition and Fertilizer Science. 15: 1078-1084. 

Compson, Z. G., Mier, M. Z., & Marks, J. C. (2009). Effects of travertine and flow on leaf retention in Fossil Creek, Arizona. Hydrobiologia, 630(1), 187-197.

Dondini M, Van Groenigen KJ, Del Galdo I, Jones M (2009). Carbon sequestration under Miscanthus: a study of 13C distribution in soil aggregates. Global Change Biology Bioenergy 1, 321-330.

Hungate BA, van Groenigen KJ, Six J, Jastrow JD, Luo Y, de Graaff MA, van Kessel C, Osenberg CW, 2009. Assessing the effect of elevated CO2 on soil C: a comparison of four meta-analyses. Global Change Biology. 15: 2020-2034

Hurteau MD, Hungate BA, Koch GW, 2009. Accounting for risk in valuing forest carbon offsets. Carbon Balance and Management. doi:10.1186/1750-0680-4-1  

Koch, G. W., & Sillett, S. C. (2009). A response to: Limitations within “The limits to tree height”. American journal of botany, 96(2), 545-547.

Langley JA, McKinley DC, Wolf AA, Hungate BA, Drake BG, Megonigal JP, 2009. Priming depletes soil carbon and releases nitrogen in a scrub-oak ecosystem exposed to elevated CO2. Soil Biology and Biochemistry 41:54-60.  

Liu X.J., Chen Z.J., Zhang Y.L., Zhou J.B. (2009). Nutrient accumulation in the sunlight greenhouse soils with the different cultivating years. Chinese Journal of Soil Science. 40: 285-289. 

Montes-Helu M, Kolb TE, Dore S, Sullivan B, Hart SC, Koch G, Hungate BA, 2009. Persistent effects of fire-induced vegetation change on energy partitioning and evapotranspiration in ponderosa pine forests of northern Arizona. Agricultural and Forest Meteorology, 149:491-500.

Mullin, L. P., Sillett, S. C., Koch, G. W., Tu, K. P., & Antoine, M. E. (2009). Physiological consequences of height-related morphological variation in Sequoia sempervirens foliage. Tree Physiology, 29(8), 999-1010.

Seiler TJ, Rasse DP, Li J, Dijkstra P, Anderson HP, Johnson DP, Powell TL, Hungate BA, Hinkle CR, Drake BG, 2009. Disturbance, rainfall and contrasting species responses mediated aboveground biomass response over 11 years of CO2 enrichment in a Florida Scrub-Oak ecosystem. Global Change Biology, 15:356–367, doi: 10.1111/j.1365-2486.2008.01740.x

Stiling P, Moon D, Rossi A, Hungate BA, Drake BG, 2009. Seeing the forest for the trees: long term exposure to elevated CO2 may increase herbivore densities. Global Change Biology 15: 1895-1902

Xu, Y., B.G. Dickson, H.M. Hampton, T.D. Sisk, J.A. Palumbo, and J.W. Prather. 2009. Effects of mismatches of scale and location between predictor and response variables on forest structure mapping. Photogrammetric Engineering and Remote Sensing, 75(3): 313-322.

Zhou J.B., Wang C.Y., Liang B., Liu X.J., Kalbitz K.(2009). Stock and distribution of organic carbon in the profiles of soil with long cultivating history. Journal of Agro-Environment Science.12: 2540-2544

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Bowker, M. A., Johnson, N. C., Belnap, J., & Koch, G. W. (2008). Short-term monitoring of aridland lichen cover and biomass using photography and fatty acids. Journal of Arid Environments, 72(6), 869-878.

Bowker, M. A., Koch, G. W., Belnap, J., & Johnson, N. C. (2008). Nutrient availability affects pigment production but not growth in lichens of biological soil crusts. Soil Biology and Biochemistry, 40(11), 2819-2826.
Cavagnaro, T. R., Langley, A. J., Jackson, L. E., Smukler, S. M., & Koch, G. W. (2008). Growth, nutrition, and soil respiration of a mycorrhiza-defective tomato mutant and its mycorrhizal wild-type progenitor. Functional plant biology, 35(3), 228-235.

Chen Z.J., Wang Y.Q., Zhou J.B., Liu X.J., Zhou B. (2008).Effects of concentrations and ratios of K+and Mg2+ions on their adsorption to soils under sunlight greenhouse cultivation. Journal of Soil and Water Conservation. 22: 106-109

Collins JG, Dijkstra P, Hart SC, Hungate BA, Flood NM, Schwartz E, 2008. Nitrogen source influences natural abundance N-15 of Escherichia coli. FEMS Microbiology Letters 282:246-250.  

Dijkstra P, LaViolette CM, Coyle JS, Selmants PC, Doucett RR, Schwartz E, Hart SC, and Hungate BA, 2008. 15N enrichment as an integrator of the effects of C and N on microbial metabolism and ecosystem function. Ecology Letters 11:389-397.

Dore S, Kolb TE, Montes-Helu M, Sullivan BW, Winslow WD, Hart SC, Kaye JP, Koch GW, and Hungate BA, 2008. Long-term impact of a stand-replacing fire on ecosystem CO2 exchange of a ponderosa pine forest. Global Change Biology 14, 1801-1820.

Duval BD, and Hungate BA, 2008. Scavenging for scrap metal. Nature Geoscience, 1:213-214.  

Hurteau MD, Koch GW, and Hungate BA, 2008. Carbon Protection and Fire Risk Reduction: Toward A Full Accounting of Forest Carbon Offsets. Frontiers in Ecology and Environment, 6, doi:10.1890/070187. 

Ishii, H. T., Jennings, G. M., Sillett, S. C., & Koch, G. W. (2008). Hydrostatic constraints on morphological exploitation of light in tall Sequoia sempervirens trees. Oecologia, 156(4), 751-763.

Jackson, RB, JT Randerson, JG Canadell, RG Anderson, R Avissar, DD Baldocchi, GB Bonan, K Caldeira, NS Diffenbaugh, CB Field, BA Hungate, EG Jobbágy, LM Kueppers, MD Nosetto, DE Pataki, 2008. Protecting climate with forests. Environmental Research Letters. 3:44066

Menyailo OV, Hungate BA, Abraham W-R, and Conrad R, 2008. Changing land use reduces soil CH4 uptake by altering biomass and activity but not composition of high-affinity methanotrophs. Global Change Biology, 14:2405-2419.

Selmants PC, Hart SC, Boyle SI, Gehring CA, and Hungate BA, 2008. Restoration of a ponderosa pine forest increases soil CO2 efflux more than either water or nitrogen additions. Journal of Applied Ecology, 45:913-920

Swanson, B. O., Gibb, A. C., Marks, J. C., & Hendrickson, D. A. (2008). Variation in foraging behavior facilitates resource partitioning in a polymorphic cichlid, Herichthys minckleyi. Environmental biology of fishes, 83(2), 147-154.

Von Schiller, D., Martí, E., Riera, J. L., Ribot, M., Marks, J. C., & Sabater, F. (2008). Influence of land use on stream ecosystem function in a Mediterranean catchment. Freshwater Biology, 53(12), 2600-2612.
Wu X.H., Peng K.Q., Liang Z.S., Liu X.J. (2008). Effects of nitrogen and phosphorus on root and shoot growth of lsatis indigotica Fort. Acta Agriculturae Boreali-Occidentalis Sinica. 17: 274-278.
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Brown ALP, Day FP, Hungate BA, Drake BG, Hinkle CR, 2007. Root biomass and nutrient dynamics in a scrub-oak ecosystem under the influence of elevated atmospheric CO2Plant and Soil. DOI 10.1007/s11104-007-9218-4

Carney KM, Hungate BA, Drake BG, Megonigal JP, 2007. Altered soil microbial community at elevated CO2 leads to loss of soil carbon. Proceedings of the National Academy of Sciences. 104:4990-4995. DOI:10.1073/pnas.0610045104

Carter, C. D., & Marks, J. C. (2007). Influences of travertine dam formation on leaf litter decomposition and algal accrual. Hydrobiologia, 575(1), 329-341.

Chapman, S. K., & Koch, G. W. (2007). What type of diversity yields synergy during mixed litter decomposition in a natural forest ecosystem? Plant and Soil, 299(1-2), 153-162.
Classen, A. T., Chapman, S. K., Whitham, T. G., Hart, S. C., & Koch, G. W. (2007). Genetic‐based plant resistance and susceptibility traits to herbivory influence needle and root litter nutrient dynamics. Journal of Ecology, 95(6), 1181-1194.
Classen, A. T., Overby, S. T., Hart, S. C., Koch, G. W., & Whitham, T. G. (2007). Season mediates herbivore effects on litter and soil microbial abundance and activity in a semi-arid woodland. Plant and soil, 295(1-2), 217-227.
Dinger, E. C., & Marks, J. C. (2007). Effects of high levels of Antimycin A on aquatic invertebrates in a warmwater Arizona stream. North American Journal of Fisheries Management, 27(4), 1243-1256.

Doucett RR, Marks JC, Blinn DW, Caron M, Hungate BA, 2007. Measuring Terrestrial Subsidies to Aquatic Food Webs Using Stable Isotopes of Hydrogen. Ecology, 88:1587-1592.

Hungate BA, Hart SC, Selmants PC, Boyle SI, Gehring CA, 2007. Soil nitrogen responses to thinning and burning, increased precipitation, and nitrogen amendment in ponderosa pine forests. Ecological Applications 17: 1352–1365

LeRoy, C. J., Whitham, T. G., Wooley, S. C., & Marks, J. C. (2007). Within-species variation in foliar chemistry influences leaf-litter decomposition in a Utah river. Journal of the North American Benthological Society, 26(3), 426-438.

Li J-H, Johnson DP, Dijkstra P, Hungate BA, Hinkle CR, Drake BG, 2007. Elevated CO2 mitigates the adverse effects of drought on daytime net ecosystem CO2 exchange and photosynthesis in a Florida scrub-oak ecosystem. Photosynthetica 45:51-58.

Li J-H, Powell TL, Seiler TJ, Johnson DP, Anderson HP, Bracho R, Hungate BA, Hinkle CR, Drake BG, 2007. Impacts of hurricane Frances on a scrub-oak ecosystem under ambient and elevated CO2: defoliation, net CO2 exchange, and interactions with elevated CO2Global Change Biology 13:1101-1113  

Marks, J. C. (2007). Down go the dams. Scientific American, 296(3), 66-71.

Patrick, L., J. Cable, D. Potts, D. Ignace, G. Barron-Gafford, A. Griffith, H. Alpert, N. van Gestel, T. Robertson, T. Huxman, J. Zak, M. Loik, and D. Tissue. 2007.  Effects of an increase in summer precipitation on leaf, soil, and ecosystem fluxes of CO2 and H2O in a sotol-grassland in Big Bend National Park. Oecologia 151:704-718.
Schwartz E, Blazewicz S, Doucett R, Hungate BA, Hart SC, Dijkstra P, 2007. Natural abundance d15N and d13C of DNA extracted from soil. Soil Biology and Biochemistry, 39, 3101-3107
Simonin, K., Kolb, T. E., Montes-Helu, M., & Koch, G. W. (2007). The influence of thinning on components of stand water balance in a ponderosa pine forest stand during and after extreme drought. Agricultural and Forest Meteorology, 143(3), 266-276.
Sisk, T. D., Castellanos V, A. E., & Koch, G. W. (2007). Ecological impacts of wildlife conservation units policy in Mexico. Frontiers in Ecology and the Environment, 5(4), 209-212.
Van Groenigen KJ, Six J, Harris D, Van Kessel C (2007). Elevated CO2 does not favor a fungal decomposition pathway. Soil Biology and Biochemistry 39, 2168-2172.
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Barnard R, Le Roux X, Hungate BA, Cleland EE, Blankinship JC, Barthes L, Leadley PW, 2006. Several components of global change alter nitrifying and denitrifying activities in an annual grassland. Functional Ecology, 20:557-564.

Blankinship J, Hungate BA, 2006. Belowground food webs in a changing climate. In, Newton PCD, Carran RA, Edwards GR, and Niklaus PA, editors, Agroecosystems in a changing climate. CRC Press.

Chapman, S. K., Langley, J. A., Hart, S. C., & Koch, G. W. (2006). Plants actively control nitrogen cycling: uncorking the microbial bottleneck. New Phytologist, 169(1), 27-34.

Classen, A. T., DeMarco, J., Hart, S. C., Whitham, T. G., Cobb, N. S., & Koch, G. W. (2006). Impacts of herbivorous insects on decomposer communities during the early stages of primary succession in a semi-arid woodland. Soil Biology and Biochemistry, 38(5), 972-982.

Day FP, Stover DB, Pagel AL, Hungate BA, Dilustro JJ, Herbert BT, Drake BG, Hinkle CR, 2006. Rapid root closure after fire limits fine root responses to elevated atmospheric CO2 in a scrub oak ecosystem in central Florida, USA. Global Change Biology, doi: 10.1111/j.1365-2486.2006.01148.x.

de Graaff MA, Van Groenigen KJ, Six J, Hungate BA, Van Kessel C, 2006. Interactions between plant growth and soil nutrient cycling under elevated CO2: a Meta-Analysis. Global Change Biology 12:2077-2091. doi:10.1111/j.1365-2486.2006.01240.x

Dickson, B.G., J.W. Prather, Y. Xu, H.M. Hampton, E.N. Aumack, and T.D. Sisk. 2006. Mapping the occurrence and probability of large fire ignitions in northernArizona. Landscape Ecology: 21: 747-761.

Dijkstra P, Menyailo OV, Doucett RR, Hart, SC, Schwartz, E, Hungate, BA, 2006. C and N availability affects the 15N natural abundance of the soil microbial biomass across a cattle manure gradient. European Journal of Soil Science, DOI:10.111/j.1365-2389.2006.00793.

Dijkstra P, Ishizu A, Doucett RR, Hart SC, Schwartz A, Menyailo O and Hungate, BA, 2006. 13C and 15N natural abundance of the soil microbial biomass. Soil Biology and Biochemistry 38:3257-3266.

Dinger, E. C., Hendrickson, D. A., Winsborough, B.M., & Marks, J. C. (2006). Role of fish in structuring invertebrates onstromatolites in Cuatro Ciénegas, México. Hydrobiologia, 563(1), 407-420.

Goodman LF, Hungate BA, 2006. Managing Alaska’s Spruce Beetle-Impacted Forests: Effects on Nitrogen Availability and Forest Regeneration. Forest Ecology and Management, 227:267-274, DOI: 10.1016/j.foreco.2006.02.041.

Hampton, H.M., E.N. Aumack, J.W. Prather, B.G. Dickson, Y. Xu, and T.D. Sisk. 2006. Development and transfer of spatial tools based on landscape ecology principles: supporting public participation in forest restoration planning in the southwestern U.S. Pages 65-95 in A. Perera, L. Buse, and T. Crow, eds., Forest landscape ecology: transferring knowledge to practice. Springer, NewYork, NY, USA.

Hulsey, C. D., Marks, J., Hendrickson, D. A.,Williamson, C. A., Cohen, A. E., & Stephens, M. J. (2006). Feeding specialization in Herichthys minckleyi: a trophically polymorphic fish. Journal of Fish Biology, 68(5), 1399-1410.

Hungate BA, Johnson DW, Dijkstra P, Hymus GJ, Stiling P, Megonigal JP, Pagel A, Moan JL, Day F, Li J-H, Hinkle CR, Drake BG, 2006. Nitrogen cycling during seven years of atmospheric CO2 enrichment. Ecology, 87:26-40.

Langley JA, Chapman SK, Hungate BA, 2006. Ectomycorrhizal colonization slows root decomposition: the post-mortem fungal legacy. Ecology Letters 9:955–959. doi:10.1111/j.1461-0248.2006.00948.x

Leroy, C. J., & Marks, J. C. (2006). Litter quality, stream characteristics and litter diversity influence decomposition rates and macroinvertebrates. Freshwater biology, 51(4), 605-617.

LeRoy, C. J., Whitham, T. G., Keim, P., & Marks,J. C. (2006). Plant genes link forests and streams. Ecology, 87(1), 255-261.

Marks, J. C., Parnell, R., Carter, C., Dinger, E.C., & Haden, G. A. (2006). Interactions between geomorphology and ecosystem processes in travertine streams: Implications for decommissioning a dam on Fossil Creek, Arizona. Geomorphology, 77(3), 299-307.

McHugh TA, Gehring CA. 2006. Belowground interactions with arbuscular shrubs decrease the performance of pinyon pine and the abundance of its mycorrhizas. New Phytologist 171: 171 – 178.

Menyailo OV, Hungate BA, 2006. Stable isotope discrimination during soil denitrification: Production and consumption of nitrous oxide, Global Biogeochem. Cycles, 20, GB3025, doi:10.1029/2005GB002527.

Menyailo OV, Hungate BA, 2006. Stable isotopes of carbon and nitrogen in northern forest soils. Doklady Earth Sciences. 409: 747-749

Menyailo OV, Hungate BA, 2006. Tree species and moisture effects on soil sources of N2O: quantifying contributions from nitrification and denitrification with 18O isotopes. Journal of Geophysical Research, doi:10.1029/2005JG000058.

Prather, J. W., N.L. Dodd, B.G. Dickson, H.M. Hampton, Y. Xu, E.N. Aumack, and T.D.Sisk. 2006. Landscape models to predict the influence of forest structure on Tassel-eared Squirrel populations. Journal of Wildlife Management. 70(3):723-731.

Reich P, Hungate BA, Luo Y, 2006. Carbon-Nitrogen Interactions in Response to Rising Atmospheric CO2Annual Reviews of Ecology, Evolution, and Systematics, 37:611-636.

Simonin,K., Kolb, T. E., Montes-Helu, M., & Koch, G. W. (2006). Restoration thinning and influence of tree size and leaf area to sapwood area ratio on water relations of Pinus ponderosa. Tree Physiology, 26(4), 493-503.

Van Groenigen KJ, Six J, Hungate BA, van Kessel C, de Graff MA, van Breemen N, 2006. Element interactions limit soil carbon storage. U.S. Proceedings of the National Academy of Sciences, 103:6571-6574, DOE:10.1073/pnas.0509038103.

Whitham, T. G., Bailey, J. K., Schweitzer, J. A., Shuster, S. M., Bangert, R. K., LeRoy, C. J., Wooley, S. C. (2006). A framework for community and ecosystem genetics: from genes to ecosystems. Nature Reviews Genetics, 7(7), 510-523. doi:10.1038/nrg1877

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Barnard R, Leadley PW, Hungate BA, 2005. Global change, nitrification and denitrification: a review. Global Biogeochemical Cycles, 19, GB1007, doi:10.1029/2004GB002282.

Classen, A. T., Hart, S. C., Whitman, T. G., Cobb, N. S., & Koch, G. W. (2005). Insect Infestations Linked to Shifts in Microclimate. Soil Science Society of America Journal, 69(6), 2049-2057.

Cohen, A. E., Hendrickson, D. A., Parmesan, C., Marks, J. C. (2005). Habitat Segregation among Trophic Morphs of the Cuatro Ciénegas Cichlid (Herichthys minckleyi) Segregación de hábitat entreformas tróficas de la mojarra de Cuatro Ciénegas (Herichthys minckleyi). Hidrobiológica,15(2), 169-181.

Dinger, E. C., Cohen, A. E., Hendrickson, D. A.,& Marks, J. C. (2005). Aquatic invertebrates of Cuatro Ciénegas, Coahuila, México: natives and exotics. The Southwestern Naturalist, 50(2), 237-246.

Hall MC, Stiling P, Hungate BA, Drake BG, Hunter MD, 2005. Effects of elevated CO2 and herbivore damage on litter quality in a scrub oak ecosystem. Chemical Ecology, 31:2343-2356. 

Hampton, H.M., E.N. Aumack, J.W. Prather, Y. Xu, B.G. Dickson, and T.D. Sisk. 2005. Demonstration and test of a spatial decision support system for forest restoration. Pp. 47-65 in The Colorado Plateau II: Biophysical, Socioeconomic, and Cultural Research (C. Van Riper and D.J. Mattson, eds.). University of Arizona Press, Tucson.

Jiang A.F., Ren X.J., Liu X.J. (2005). New study of nitrate contents about vegetables in Xinxiang[J]. Journal of Henan Vocation-technical Teachers College. 33: 53-55. 

Johnson, N. C., Wolf, J., Reyes, M. A., Panter, A., Koch, G. W., & Redman, A. (2005). Species of plants and associated arbuscular mycorrhizal fungi mediate mycorrhizal responses to CO2 enrichment. Global Change Biology, 11(7), 1156-1166.

Prather, J.W., H.M. Hampton, Y. Xu, B.G. Dickson, N.L. Dodd, E.N. Aumack, and T.D. Sisk. 2005. Modeling the effects of forest restoration treatments on sensitive wildlife taxa: a GIS-based approach. Pp. 69-85 in The Colorado Plateau II: Biophysical, Socioeconomic, and Cultural Research (C. Van Riper and D.J. Mattson, eds.). University of Arizona Press, Tucson.  

Swanson, B. O., Gibb, A. C., Marks, J. C., &Hendrickson, D. A. (2005). Do movement patterns differ between laboratory and field suction feeding behaviors in a Mexican cichlid? Environmental biology of fishes, 74(2), 201-208.

Whitham, T. G., Lonsdorf, E., Schweitzer, J. A., Bailey, J. K., Fischer, D. G., Shuster, S. M., Woolbright, S. (2005)."All effects of a gene on the world": Extended phenotypes, feedbacks, and multi-level selection. Ecoscience, 12(1), 5-7.

van Gestel, N., A. Nesbit, E. Gordon, C. Green, P. Paré, L. Thompson, E. Peffley, and D. Tissue. 2005. Continuous light may induce photosynthetic downregulation in onion – consequences for growth and biomass partitioning. Physiologia Plantarum 125:235-246.

Van Groenigen KJ, Gorissen A, Six J, Harris D, Kuikman P, Van Groenigen JW, VanKessel C (2005). Decomposition of 14C-labeled roots in a pasture soil exposed to 10 years of elevated CO2. Soil Biology and Biochemistry 37, 497-506.

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Ellsworth, D. S., Reich, P. B., Naumburg, E. S., Koch, G. W., Kubiske, M. E., & Smith, S. D. (2004). Photosynthesis, carboxylation and leaf nitrogen responses of 16 species to elevated pCO2 across four free‐air CO2 enrichment experiments in forest, grassland and desert. Global Change Biology, 10(12), 2121-2138.

Ellsworth, D. S., Reich, P. B., Naumburg, E. S., Koch, G. W., Kubiske, M. E., Smith, S. D., Sandquist, D. Plants, Soil, and Environment–Publications List 2004. Environmental Microbiology, 6(8), 769-779.

Flaccus, K., Vlieg, J., Marks, J. C., & LeRoy, C. J. (2004). Restoring Fossil Creek. Science Teacher, 71(6), 36-40.

Hungate BA, Stiling PD, Dijkstra P, Johnson DW, Ketterer ME, Hymus GJ, Hinkle CR, and Drake BG, 2004. CO2 elicits long-term decline in nitrogen fixation. Science 304: 1291.

Huxman,T. E., Smith, M. D., Fay, P. A., Knapp, A. K., Shaw, M. R., Loik, M. E., Williams, D. G. (2004). Convergence across biomes to a common rain-use efficiency. Nature, 429(6992), 651-654.

Koch, G. W., Sillett, S. C., Jennings, G. M., & Davis, S. D. (2004). The limits to tree height. Nature, 428(6985), 851-854.

Luo Y, Su B, Currie WS, Dukes JS, Finzi A, Hartwig U, Hungate BA, McMurtrie R, Oren R, Parton WJ, Pataki D, Shaw MR, Zak DR, Field CB, 2004. Progressive nitrogen limitation of plant and ecosystem responses to elevated CO2Bioscience, 54:731-739.

Moline, A. B., Shuster, S. M., Hendrickson, D. A., & Marks, J. C. (2004). Genetic variation in a desert aquatic snail (Nymphophilus minckleyi) from Cuatro Ciénegas, Coahuila, Mexico. Hydrobiologia, 522(1-3), 179-192.

Pendall E, Bridgham S, Hanson PJ, Hungate BA, Kicklighter DW, Johnson DW, Law BE, Luo Y, Megonigal JP, Olsrud M, Ryan MG, Wan S, 2004. Belowground Process Responses to Elevated CO2 and Temperature: A Discussion of Observations, Measurement Methods, and Models. New Phytologist, 162:311-322

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Chapman, S. K., Hart, S. C., Cobb, N. S., Whitham, T. G., & Koch, G. W. (2003). Insect herbivory increases litter quality and decomposition: an extension of the acceleration hypothesis. Ecology, 84(11), 2867-2876.

Dijkstra P, Williamson C, Menyailo OV, Doucett RR, Koch GW, Hungate BA, 2003. Intra-plant variation of nitrogen isotope composition in a meadow and a forest understory. Isotopes in Environmental and Health Sciences 39:29-39 

Hungate BA, Dukes JS, Shaw MR, Luo Y, Field CB, 2003. Nitrogen and Climate Change. Science 302:1512-1513

Hungate BA, Vitousek PM, Stewart J, Victoria R, Kenichi S, Naiman RJ, Cole JJ, Apps M, Moldan B, 2003. Disturbance and Element Interactions. In J Melillo, CB Field, B. Moldan (eds.) SCOPE 61: Interactions of the Major Biogeochemical Cycles. Island Press

Johnson DW, Hungate BA, Dijkstra P, Hymus G, Hinkle CR, Stiling P, Drake BG, 2003. The effects of elevated CO2 on nutrient distribution in a fire-adapted scrub oak forest. Ecological Applications 13:1388-1399

Johnson, N. C., Wolf, J., & Koch, G. W. (2003). Interactions among mycorrhizae, atmospheric CO2 and soil N impact plant community composition. Ecology Letters, 6(6), 532-540.

Koch, G. W. (2003). Final Scientific Report DE-FGO3-97ER62460 Stomatal Responses to CO2: A Comparison of Woody and Herbaceous Species in Arid and Humid Climates. Northern Arizona University (US).

Langley JA, Hungate BA, 2003. Mycorrhizal controls on belowground litter quality. Special Feature: Belowground Community Dynamics. Ecology 84:2302-2312

Langley JA, Dijkstra P, Drake BG, Hungate BA, 2003. Ectomycorrhizal colonization, biomass and production in a regenerating scrub-oak forest under elevated CO2. Ecosystems 6:424-430

Li J-H, Dugas WA, Hymus GJ, Johnson DP, Hinkle CR, Drake BG, Hungate BA, 2003. Direct and indirect effects of elevated CO2 on transpiration of Quercus myrtifolia in a scrub-oak ecosystem. Global Change Biology 9:96-105

Menyailo OV, Hungate BA, Lehmann J, Gebauer G, Zech W, 2003. Tree species of the Central Amazon and soil moisture alter stable isotope composition of nitrogen and oxygen in nitrous oxide evolved from soil. Isotopes in Environmental and Health Sciences 39:41-52  

Menyailo OV, Hungate BA, 2003. Interactive effects of tree species and soil moisture on methane consumption. Soil Biology and Biochemistry 35:625-628

Palermo, B. L., Clancy, K. M., & Koch, G. W. (2003). Feeding and oviposition behavior do not explain Douglas-fir resistance to defoliation by the western spruce budworm (Lepidoptera: Tortricidae). Environmental entomology, 32(3),626-632.

Palermo, B. L., Clancy, K. M., & Koch, G. W. (2003). The potential role of ectomycorrhizal fungi in determining Douglas-fir resistance to defoliation by the western spruce budworm (Lepidoptera: Tortricidae). Journal of economicentomology, 96(3), 783-791.

Swanson, B. O., Gibb, A. C., Marks, J. C., & Hendrickson, D. A. (2003). Trophic polymorphism and behavioral differences decrease intraspecific competition in a cichlid, Herichthys minckleyi. Ecology, 84(6),1441-1446.

van Groenigen KJ, Six J, Harris D, Blum H, van Kessel C (2003). Soil 13C-15N dynamics in an N2-fixing clover system under long-term exposure to elevated atmospheric CO2. Global Change Biology 9, 1751-1762.

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Dijkstra P, Hymus G, Colavito D, Vieglais D, Cundari C, Johnson D, Hungate BA, Hinkle CR, Drake BG, 2002. Elevated atmospheric CO2 stimulates shoot growth in a Florida scrub-oak ecosystem. Global Change Biology 8:90-103

Dukes JS, Hungate BA, 2002. Elevated CO2 and litter decomposition in California annual grasslands: which mechanisms matter? Ecosystems 5:171-183

Hungate BA, Koch GW, 2002. Global Environmental Change: Biospheric Impacts and Feedbacks. In J Holton, J Pyle, J Currie (eds.) Encyclopedia of Atmospheric Science Academic Press, Ltd. pp 876-885.

Hungate BA, Reichstein M, Dijkstra P, Johnson D, Hymus G, Tenhunen JD, Drake BG, 2002. Evapotranspiration and soil water content in a scrub-oak woodland under carbon dioxide enrichment. Global Change Biology, 8:289-298

Hymus GJ, Snead TG, Johnson DP, Hungate BA, Drake BG, 2002. Leaf mitochondrial respiration of scrub-oak leaves growing in elevated atmospheric CO2Global Change Biology, 8:317-328

Langley JA, Hungate BA, Drake BG, 2002. Extensive belowground carbon storage supports roots and mycorrhizae in regenerating scrub-oaks. Oecologia 131:542-548 (NAU Biology, Best Student Paper Award, 2002)

Menyailo OV, Hungate BA, Zech W, 2002. The effect of grassland conversion and single tree species on soil microbial activities related to C and N cycling in the Siberian artificial afforestation experiment. Plant and Soil 242: 183-196

Menyailo OV, Hungate BA, Zech W, 2002. Tree species mediated soil chemical changes in the Siberian artificial afforestation experiment. Plant and Soil 242: 171-182

Stiling P, Cattell M, Moon DC, Rossi A, Hungate BA, Hymus G, Drake BG, 2002. Elevated atmospheric CO2 lowers herbivore abundance but increases leaf abscission rates. Global Change Biology 8:658-667

Van Groenigen KJ, Harris D, Horwath W, Hartwig UA, van Kessel C (2002). Linking 13C- and 15N-dynamics in aggregates of a pasture soil after 8 years of elevated atmospheric CO2. Global Change Biology 8, 1094-1108

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Amthor, J. S., Koch, G. W., Willms, J. R., & Layzell, D. B. (2001). Leaf O2 uptake in the dark is independent of coincident CO2 partial pressure. Journal of Experimental Botany, 52(364), 2235-2238.

Cardon ZG, Hungate BA, Holland EA, Chapin FS III, and Field CB, 2001. Contrasting effects of elevated CO2 on old and new soil carbon pools. Soil Biology and Biochemistry 33:365-373

Hungate BA, Marks JC, 2001. Impacts of global change on terrestrial and aquatic ecosystems. In J Canadell and HA Mooney (eds.) Encyclopedia of Global Change, Volume 2: The Earth system: biological and ecological dimensions of global environmental change. John Wiley and Sons, Ltd.

Hymus GJ, Dijkstra P, Baker NR, Drake BG and Long SP, 2001. Will rising CO2 protect plants from the midday sun? A study of photoinhibition of Quercus myrtifolia in a scrub-oak community in two seasons. Plant, Cell and Environment 12:1361-1368.

Johnson DW, Hungate BA, Dijkstra P, Hymus G, Drake BG, 2001. Effects of Elevated CO2 on Soils in a Florida Scrub Oak Ecosystem. Journal of Environmental Quality 30:501-507

Johnson DW, Norby RJ, Hungate BA, 2001. Effects of Elevated CO2 on Nutrient Cycling in Forests. In DF Karnowsky, R Ceulemans, GE Scarascia-Mugnozza (eds): The Impact of Carbon Dioxide and Other Greenhouse Gases on Forest Ecosystems. CAB International, pp. 237-252.

Lodge RJ, Dijkstra P, Drake BG and Morison JIL, 2001. Stomatal acclimation to increased CO2 concentration in a Florida scrub oak species Quercus myrtifolia Willd. Plant, Cell and Environment 24: 77-88.

Loustau D, Hungate BA, Drake BG, 2001. Water, Nitrogen, Rising atmospheric CO2 and Terrestrial Productivity. In J Roy, B Saugier, and HA Mooney, (eds): Terrestrial Global Productivity Academic Press, San Diego.

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Hungate BA, Jaeger CH III, Gamara G, Chapin FS III, Field CB, 2000. Soil microbiota in two annual grasslands: responses to elevated CO2. Oecologia 124:589-598

Li J, Dijkstra P, Hymus GJ, Wheeler RM, Piastuch WC, Hinkle CR and Drake BG, 2000. Leaf senescence of Quercus myrtifolia as affected by long-term CO2 enrichment in its native environment. Global Change Biology 6: 727-733.

Marks, J. C., Power, M. E., & Parker, M. S. (2000). Flood disturbance, algal productivity, and interannual variation in food chain length. Oikos, 90(1), 20-27.

Schapendonk AHCM, Van Oijen M, Dijkstra P, Pot CS, Jordi WJRM and Stoopen GM, 2000. Effects of elevated CO2 concentration on photosynthetic acclimation and productivity of two potato cultivars grown in open-top chambers. Australian Journal of Plant Physiology 27: 1119-1130. 

Schortemeyer M, Dijkstra P and Drake BG, 2000. Effects of elevated atmospheric CO2 concentration on C and N pools and rhizosphere processes in a Florida scrub oak community. Global Change Biology 6: 383-391.

Sisk, T.D., B.R. Noon and H.M. Hampton. 2000. Estimating the effective area of habitat patches in heterogeneous landscapes in J. M. Scott, P. Heglund and M.L.Morrison et al, eds. Predicting Species Occurrences. Island Press, Covelo, pp.713-726.

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